
“The mistake, of course, is to have thought that peer review was any more than a crude means of discovering the acceptability — not the validity — of a new finding.” – Richard Horton, editor of The Lancet
Prelude
I awoke the other morning to find in my inbox something I had been anticipating and, to be honest, dreading for a while.
I looked at the subject line and muttered, “Oh Shit!”
These were the reviews for a manuscript I was an author on, mostly last year and earlier this year. The emotions this stirred up were quite intense, and I found myself pausing and putting off digesting the reviews for several hours. It got me to think about why I feel so much dread about this. Part of this is my lifelong experience with this process and various episodes with referees’ reports. Most referees are decent and constructive. A few are monsters. They make the entire process brutal and unpleasant. They ruin something wonderful. I will detail what has led to it being a fairly unpleasant experience to read most reviews.
Reviews are Essential
“Criticism may not be agreeable, but it is necessary. It fulfils the same function as pain in the human body. It calls attention to an unhealthy state of things.” — Winston Churchill
Before getting started on the reason for trauma, I would like to elaborate on the topic more broadly. Reviewing the work of peers is an essential part of science. This includes the process for journal articles. I truly believe in the peer review process and its centrality to the quality of the archival literature. It is also a process by which articles are both checked and improved, and it provides a great deal of valuable feedback to authors that is valuable. It also takes place behind the veil of anonymity. This also empowers nasty behavior. This is the source.
The other people who sit at the center of this particular process are the editors and associate editors for any given publication. I have served as an associate editor for a journal and found it a sometimes difficult but often rewarding process. My general observation is that the editors do nothing about reviewer behavior. Part of the issue is that the willingness of reviewers is tenuous. Moreover, some of the worst behavior comes from some editors and leaders in the field. One friend told me that I had chosen a particularly nasty subfield. Many of the leading lights of the field could be brutal and unprofessional. Other subfields were far nicer.
One of the things that occurs to me is the relative degree to which the editors don’t act as more effective gatekeepers in policing some of the more egregious behavior by reviewers. This could go a long way toward making things significantly better. One of the episodes I’ll discuss involved an associate editor directly and speaks to how underlying biases and general viewpoints of the editors can imprint on the overall process.
Done right, the process can lead to an enhancement of the literature. Done poorly, it can leave emotional scars and create baggage for the authors. It can also serve as a relative stagnation of a field. There is also gatekeeping that is counter to progress. In my opinion, there are a variety of biases and problems with the literature that the current process does not fully appreciate and does not do a good job of policing.
I can elaborate on some examples of the problems that I’ve seen in the literature and the reasons for engendering the sorts of emotions that they get. I will elaborate on a few of the more extreme examples in my time. I should note that the current reviews, in retrospect, will not likely stick out in this regard. I’m just noting my preconception and reaction. They’re fairly ordinary, but the emotions that they prompted got me to thinking about the whole dynamic.
As a professional, I do quite a few reviews myself. That number is probably dropping off, but in general, with retirement. The perspective I take in doing reviews is that I try to have empathy and compassion for the authors. This approach is prompted and governed by the experiences I detail below. I try to avoid some of the more egregious examples that I’ll discuss in this essay.
When I do a review, my intention is to provide something that is first and foremost focused on improving the quality of the article. I am acting as a quality filter as well. I am pointing out any lapses or issues with the narrative. That said, I certainly represent a specific viewpoint and opinion on what articles can contain (rather than what they should contain). This is something that I think is impossible to scrub. Nonetheless, I am mindful that my views are not perfect. I do wonder whether or not my own perspective and biases end up producing the effect that I speak out against regularly. God, I hope not!
“We (Mr. Rosen and I) had sent you our manuscript for publication and had not authorized you to show it to specialists before it is printed. I see no reason to address the—in any case erroneous—comments of your anonymous expert. On the basis of this incident I prefer to publish the paper elsewhere.” — Albert Einstein
Reviews are Traumatic
My very first papers were in an obscure subfield, space nuclear power. My co-author and professor was a big deal in the field. What I did not recognize was that this shielded me from issues. In this field, he was a criticism deflector. I would soon learn the sort of critiques one could receive without this protection. On the other hand, he was a monster to me. Writing a paper with him was torture. It was part of what drove me away and made me recoil from his influence. I stepped away and found a new path.
“Academic politics is the most vicious and bitter form of politics, because the stakes are so low.” — Sayre’s Law, attributed to Wallace Sayre
When I started on numerical methods for hyperbolic conservation laws, my education and work took a particular arc. The entry point, looking at their methods, was flux-corrected transport. These are methods that were devised by Jay Boris in collaboration with David Book and also include a rather spectacular contribution by Stephen Zalesak. These methods and papers were part of the start of a computational revolution. They sparked my imagination when I read them and tested out the methods. My goal was to understand FCT better.
In continuing my study, certain aspects of the physicist’s point of view from which flux-corrected transport (FCT) began did not sit well with me. I was drawn toward some order, mathematics. There were certain mathematical shortcomings that became obvious, and over time, I became far more attracted to the family of methods that were devised by Bram Van Leer and mathematically sorted out by Ami Harten. In the process, I wrote a paper trying to bridge between these two bodies of work. Unbeknownst to me, I had stepped into a minefield.
What I would find out later is that there was a fairly nasty war for credit between the FCT camp and the Godunov-type method camp. Represented by Jay Boris on one side and Bram Van Leer on the other. I have now heard tales of rather vociferous and nasty reviews of papers being passed back and forth between this set of authors and some depth of hard feelings that were generated as a result. When I wrote my paper on the bridge between the two, I had no such knowledge and walked into this as an innocent. These conflicts were completely out of my sight. I had no insiders to clue me in or warn me.
I had taken a certain perspective in looking at this, which was to embrace some of the mathematical rigor and structure that Harten, in particular, had introduced. I looked to see where that structure would embrace flux-corrected transport and the manner in which it would break down. It uncovered some mechanism for oscillations in results (non-monotone behavior). The way that I did the analysis was to project flux-corrected transport onto the perspective of total variation diminishing methods (TVD). I found that the limits of the method were that it would not produce TVD results. The TVD theory was a way of seeing FCT differently. A path to better understanding. A good idea that was stupid culturally.
“Criticism is prejudice made plausible.” — H. L. Mencken
I wrote the paper and sent it off to the Journal of Computational Physics. The upshot is the paper was never published in the Journal. It got cast into a sort of referee limbo, which also coincided with a tumultuous period with the Journal. The journal passed to new editors and directions. I also knew the identity of all three of the reviewers by the end of it, each a quite famous person in the field. One identified themself, another in a conversation, and the last by administrative error.
- One of them, Ami Harten, liked the paper immensely and suggested that it be published immediately. This was the first review I received, and needless to say, I was over the moon. He sent me a letter and an analysis of the FCT Ami had published with NASA. Ami had done what I did. I found out why it had never been published. I only spoke with Ami on the phone, never met in person.
- The second review I received was relatively neutral regarding the manuscript but offered a host of fairly pedantic corrections to grammar and various technical details of the paper. This was the Editor of the Journal, Phil Roe. I would meet Phil later in my career.
- I got the third review, which was absolutely and unremittingly brutal. I should say that the brutality was matched by the technical skill of the referee, whose knowledge and technical edge were unmistakable. Nonetheless, the review was absolutely savage and, to some degree, has left a lasting mark on my soul. I did meet him once at a conference. He seemed quite nice and absolutely the opposite of the monster in the review.
“Man is least himself when he talks in his own person. Give him a mask, and he will tell you the truth—or his most vicious lies.” — Adapted from Oscar Wilde
I would have the bad fortune of having another paper reviewed by the same person, whose character in the next review was virtually identical. I could see the same approach and use of language. The giveaway was figures in the review that matched an article he wrote, and I had read. Technically well accomplished and absolutely and utterly savage in tone and attitude. The attitude, in fact, burgeoned into something completely unprofessional. There were ad hominem attacks. I suspect I was being treated as if there was a personal grudge. Some of the savagery was a vestige of the “Limiter wars”.
“Peer review is at the heart of the processes of not just medical journals but of all of science… Yet its defects are easier to identify than its attributes.” — Richard Smith
After five years and a change in Journal editorship, I was offered the opportunity to take up the effort to publish it. I declined as I had moved on. It was also right after my second child was born. I had just moved to X-Division as well. That third review, rather than making a better paper, simply killed the article. It left lasting trauma, too. In the meantime, Ami has tragically died far too young. The whole episode left me scarred and bitter. I think this was utterly counter-productive.
“A new scientific truth does not triumph by convincing its opponents and making them see the light, but rather because its opponents eventually die, and a new generation grows up that is familiar with it.” — Max Planck
Reviews are Biased
I was talking about journal reviews with my friend and colleague Dana. Like me, Dana worked across multiple technical communities. As I complained about the reviews, Dana interjected, “Why are you working in shocks?” Continuing, “That bunch has the nastiest reviews; things are much different in numerical linear algebra.” This shone a light into a reality, the subcultures could be different. At this point, I can see that it’s harsh and sharp in shocks. In other areas, the culture is polite and constructive. It would be worth getting to the bottom of this. I won’t. Nonetheless, this is the start of bias in the process. These differences are subtle and matters of degree, not wholesale substance.
“Peer review is faith-based, slow, wasteful, ineffective, largely a lottery, easily abused, prone to bias…” — Richard Smith
One of my conclusions is that shock wave computing is highly expert-based and subjective. This leads to power for gatekeepers. Ultimately, this part of the bias exposes the nature of gatekeeping in each subfield. One rejects and removes critique. The second nudges and pushes work toward rigor. Not that it doesn’t happen in CFD; it happens less. It is easy to see which attitude moves the needle of progress, too. Conversely, there are rejections in numerical linear algebra. This is the tendency and the spectrum of responses. As in most cultures, these are taught and reinforce attitudes as acceptable. In a sense, the cultures are taught by the forefathers of a field. I wonder who set the tone originally?
My particular case stepped into the next bias. FCT, TVD, and Godunov-type methods are all great ideas. Each of them has distinct strengths and weaknesses. These small differences become the focus of all-out wars. I had inadvertently stepped into a battle. I took a side without knowing it and invited an ambush. None of this is explained to you until after the fact. I only learned the backstory later as my circle of professional friends “crossed the streams.” Eventually, you understand these things.
The insider who is a student of one of the leaders (or their students) of the field gets a different view. They also get a far more biased perspective. This is usually focused on the hero’s (or his advisor’s) role. It will thus inherit the bias of their advisor. The other side of the dispute is cast as the villain. One side is the other side’s villains. There is the occasional traitor or turncoat. All of this is unleashed onto the reviews. This almost completely explains the problems with my reviews.
Other behaviors are taught. The mode of peer review and critique is shaped. The tone and approach to giving a review are taught as well. Usually, you see this copied quite cleanly. Students often adopt the style of their advisor, rarely just in part. It is very much part of the abused becoming the abusers. In a sense, it can all come out as so much academic hazing. To some degree, I came to see most of the PhD process as having. There is genuine work and knowledge included in a PhD, but make no mistake, hazing. This hazing, if unquestioned, just fully bakes into the culture. We are all responsible for it and subject to it.
“We know that the system of peer review is biased, unjust, unaccountable, incomplete, easily fixed, often insulting, usually ignorant, occasionally foolish, and frequently wrong.” – Richard Horton, editor of The Lancet

Fixing the Process
As a starting point, some of these issues shouldn’t be solved. They are simply a reality of a human endeavor. People are biased. Those biases are present in all their actions. Some of these are good biases, such as a value of correctness and clarity. Thus, an article review is always biased. Nonetheless, we are poor at detecting the internal culture of a field from the inside. We should identify those reviewing constructive cultures, and adopt their practices. We should prize and promote progress. Of course, first a field needs to see its problems. Since the leaders are the ones teaching and promoting practices, it seems difficult at best.
Since I really did not have this sort of training. I developed my own protocols. I was more exposed to the ravages of reviews, too. I did not have a wise senior person to keep me from crossing a line. As such, I received the education the hard way. The truth is that the process might be impossible to fix. This may simply be part of a human endeavor. People will be people, and some of them will be assholes. We are tribal. Some of the assholes will only be assholes to people from the other tribes. Anonymity will empower this. Editors do not police shitty reviews. This is especially bad when the shitty review is technically excellent.
A few light rules would help a great deal to engender progress, and reduce the vile trauma”
- Being anonymous tempts one to be a dick. Don’t be a dick. Maybe consider signing your review and giving that up.
- Critiques should be focused on making progress and improving the paper. View the paper as salvagable.
- Check your bias, and try to see the other side.
A big problem with gatekeepers isn’t that they are right, but rather they have power. They want to keep this power. They love the fact that their ideas are accepted and valuable. They do not want to give this up. Progress is a threat.
Maybe this problem just is and will be.
“When a true genius appears in the world, you may know him by this sign, that the dunces are all in confederacy against him.” — Jonathan Swift
References
Rider, William J., and Dennis R. Liles. “A Generalized Flux-Corrected Transport Algorithm I: A Finite-Difference Formulation.” arXiv preprint arXiv:2411.12627 (2024).
Rider, William J., Jeffrey A. Greenough, and James R. Kamm. “Accurate monotonicity-and extrema-preserving methods through adaptive nonlinear hybridizations.” Journal of Computational Physics 225, no. 2 (2007): 1827-1848.
































